Publications

Avik Mukherjee, Yanqing Huang, Seungeun Oh, Carlos Sanchez, Yu-Fang Chang, Xili Liu, Gary Andrew Bradshaw, Nina Catherine Benites, Johan Paulsson, Marc W. Kirschner, Yongjin Sung, Jens Elgeti, and Markus Basan. “A Universal Mechanism of Biomass Density Homeostasis via Ribosomal Counterions”

Avik Mukherjee, Yanqing Huang, Jens Elgeti, Seungeun Oh, Dan-Dan Su, Christophe Dupre, Nina Catherine Benites, Xili Liu, Leonid Peshkin, Mihail Barboiu, Hugo Stocker, Marc W Kirschner, and Markus Basan. 2026. “Membrane Potential Mediates the Cellular Response to Mechanical Pressure”. Cell, 189, 1, Pp. 17. doi:10.1016/j.cell.2025.11.004

Avik Mukherjee, Yu-Fang Chang, Yanqing Huang, Jade Ealy, Mark Polk, and Markus Basan. 2024. “Plasticity of Growth Laws Tunes Resource Allocation Strategies in Bacteria”. PLOS Computational Biology, 20, 1

Severin Schink, Mark Polk, Edward Athaide, Avik Mukherjee, Constantin Ammar, Xili Liu, Seungeun Oh, Yu-Fang Chang, and Markus Basan. 2024. “Survival Dynamics of Starving Bacteria Are Determined by Ion Homeostasis for Maintaining Plasmolysis”. Nature Physics

Yanqing Huang, Avik Mukherjee, Severin Schink, Nina Catherine Benites, and Markus Basan. 2024. “Evolution and Stability of Complex Microbial Communities Driven by Trade-Offs”. Molecular Systems Biology, Pp. 1-9

Avik Mukherjee, Jade Ealy, Yanqing Huang, Nina Catherine Benites, Mark Polk, and Markus Basan. 2023. “Coexisting Ecotypes in Long-Term Evolution Emerged from Interacting Trade-Offs”. Nature Communications, 14, Pp. 3805

Shalaka Chitale, Wenxuan Wu, Avik Mukherjee, Herbert Lannon, Pooja Suresh, Ishan Nag, Christina M. Ambrosi, Rona S. Gertner, Hendrick Melo, Brendan Powers, Hollin Wilkins, Henry Hinton, Michael Cheah, Zachariah G. Boynton, Alexander Alexeyev, Duane Sword, Markus Basan, Hongkun Park, Donhee Ham, and Jeffrey Abbott. 2023. “A Semiconductor 96-Microplate Platform for Electrical-Imaging Based High-Throughput Phenotypic Screening”. Nature Communications, 14, 7576

Severin Josef Schink, Dimitris Christodoulou, Avik Mukherjee, Edward Athaide, Viktoria Brunner, Tobias Fuhrer, Gary Andrew Bradshaw, Uwe Sauer, and Markus Basan. 2022. “Glycolysis/Gluconeogenesis/Specialization/in/Microbes/Is/Driven/by/Biochemical/Constraints/of/Flux/Sensing”. Molecular Systems Biology, 18, 1, Pp. e10704

Severin Schink, Zara Gough, Elena Biselli, Mariel Garcia Huiman, Yu-Fang Chang, Markus Basan, and Ulrich Gerland. 2022. “MetA Is a ‘thermal Fuse’ That Arrests Growth and Protects Escherichia Coli at Elevated Temperatures”. Cell Reports, 40, 9, Pp. 111290

Jeffrey Abbott, Avik Mukherjee, Wenxuan Wu, Tianyang Ye, Han Sae Jung, Kevin M. Cheung, Rona S. Gertner, Markus Basan, Donhee Ham, and Hongkun Park. 2022. “Multi-Parametric Functional Imaging of Cell Cultures and Tissues With a CMOS Microelectrode Array”. Lab on a Chip

Severin Schink, Constantin Ammar, Yu-Fang Chang, Ralf Zimmer, and Markus Basan. 2022. “Analysis of Proteome Adaptation Reveals a Key Role 1 of the Bacterial Envelope in Starvation Survival”. Molecular Systems Biology, 18, 12, Pp. e11160

Seungeun Oh, Changhee Lee, Wenlong Yang, Ang Li, Avik Mukherjee, Markus Basan, Chongzhao Ran, Wei Yin, Clifford J. Tabin, Dan Fu, X. Sunney Xie, and Marc W. Kirschner. 2021. “Protein and Lipid Mass Concentration Measurement in Tissues by Stimulated Raman Scattering Microscopy”. PNAS, 119, 17, Pp. e2117938119